Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_TB0-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 869_TB0-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 869_TB0-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TB0-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79671130 total, 82622 skipped (flags/unmapped)
Fragments: 40014418 total (39544202 tlen-paired, 10289 hash-paired, 11989 singletons, 9655 discordant, 438283 orphans, 4972 too large [>5000 bp], 7743623 duplicates)
Reads: 87324800 total, 77961 skipped (flags/unmapped)
Fragments: 43862571 total (43348396 tlen-paired, 10010 hash-paired, 13156 singletons, 6832 discordant, 484177 orphans, 9515 too large [>5000 bp], 8455897 duplicates)
Reads: 87880845 total, 81287 skipped (flags/unmapped)
Fragments: 44136745 total (43604373 tlen-paired, 10533 hash-paired, 13154 singletons, 9933 discordant, 498752 orphans, 18987 too large [>5000 bp], 8479499 duplicates)
Reads: 90123021 total, 180774 skipped (flags/unmapped)
Fragments: 45486841 total (43896385 tlen-paired, 10695 hash-paired, 13454 singletons, 304158 discordant, 1262149 orphans, 122084 too large [>5000 bp], 8694016 duplicates)