Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_7L-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1136_7L-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_7L-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7L-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72951532 total, 74220 skipped (flags/unmapped)
Fragments: 36674429 total (36155255 tlen-paired, 12392 hash-paired, 13513 singletons, 8670 discordant, 484599 orphans, 13283 too large [>5000 bp], 6981518 duplicates)
Reads: 72331714 total, 84428 skipped (flags/unmapped)
Fragments: 36360220 total (35855066 tlen-paired, 11646 hash-paired, 13851 singletons, 9920 discordant, 469737 orphans, 5217 too large [>5000 bp], 6939095 duplicates)
Reads: 82185088 total, 177719 skipped (flags/unmapped)
Fragments: 41541314 total (39859355 tlen-paired, 11747 hash-paired, 15458 singletons, 328843 discordant, 1325911 orphans, 133055 too large [>5000 bp], 7833186 duplicates)
Reads: 80235167 total, 78639 skipped (flags/unmapped)
Fragments: 40335232 total (39779879 tlen-paired, 12455 hash-paired, 14959 singletons, 7178 discordant, 520761 orphans, 10892 too large [>5000 bp], 7652260 duplicates)