Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_3JH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1136_3JH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_3JH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3JH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63091576 total, 69643 skipped (flags/unmapped)
Fragments: 31762637 total (31237076 tlen-paired, 3753 hash-paired, 8253 singletons, 9531 discordant, 504024 orphans, 4468 too large [>5000 bp], 6015172 duplicates)
Reads: 63321615 total, 66787 skipped (flags/unmapped)
Fragments: 31880077 total (31336702 tlen-paired, 5293 hash-paired, 8001 singletons, 8244 discordant, 521837 orphans, 12256 too large [>5000 bp], 6019403 duplicates)
Reads: 69236194 total, 65939 skipped (flags/unmapped)
Fragments: 34861131 total (34281844 tlen-paired, 4089 hash-paired, 8572 singletons, 7123 discordant, 559503 orphans, 8034 too large [>5000 bp], 6569976 duplicates)
Reads: 71998108 total, 154039 skipped (flags/unmapped)
Fragments: 36504149 total (34689638 tlen-paired, 3754 hash-paired, 8982 singletons, 360758 discordant, 1441017 orphans, 142885 too large [>5000 bp], 6792791 duplicates)