Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_3X6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1136_3X6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_3X6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_3X6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 93921495 total, 94514 skipped (flags/unmapped)
Fragments: 47195378 total (46570817 tlen-paired, 12327 hash-paired, 14698 singletons, 11407 discordant, 586129 orphans, 18526 too large [>5000 bp], 10656421 duplicates)
Reads: 93401900 total, 101164 skipped (flags/unmapped)
Fragments: 46930427 total (46332579 tlen-paired, 13181 hash-paired, 14873 singletons, 12423 discordant, 557371 orphans, 6063 too large [>5000 bp], 10664839 duplicates)
Reads: 101991515 total, 96236 skipped (flags/unmapped)
Fragments: 51251342 total (50597576 tlen-paired, 13975 hash-paired, 15708 singletons, 9036 discordant, 615047 orphans, 11675 too large [>5000 bp], 11595208 duplicates)
Reads: 105094683 total, 226107 skipped (flags/unmapped)
Fragments: 53066946 total (51092586 tlen-paired, 14402 hash-paired, 16373 singletons, 383686 discordant, 1559899 orphans, 155478 too large [>5000 bp], 11906898 duplicates)