Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_7VJ-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VJ-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VJ-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_7VJ-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 71646401 total, 80631 skipped (flags/unmapped)
Fragments: 35995819 total (35537086 tlen-paired, 11963 hash-paired, 9496 singletons, 10462 discordant, 426812 orphans, 5220 too large [>5000 bp], 6198421 duplicates)
Reads: 72324716 total, 75264 skipped (flags/unmapped)
Fragments: 36335950 total (35864473 tlen-paired, 11129 hash-paired, 9268 singletons, 9204 discordant, 441876 orphans, 14348 too large [>5000 bp], 6229438 duplicates)
Reads: 78610303 total, 75409 skipped (flags/unmapped)
Fragments: 39497405 total (38998546 tlen-paired, 11952 hash-paired, 9959 singletons, 7785 discordant, 469163 orphans, 9603 too large [>5000 bp], 6780925 duplicates)
Reads: 81083626 total, 175356 skipped (flags/unmapped)
Fragments: 40931861 total (39439336 tlen-paired, 11983 hash-paired, 10470 singletons, 290076 discordant, 1179996 orphans, 117507 too large [>5000 bp], 6968341 duplicates)