Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_NTY-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_NTY-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_NTY-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_NTY-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 96628504 total, 107837 skipped (flags/unmapped)
Fragments: 48612318 total (47874909 tlen-paired, 8034 hash-paired, 16297 singletons, 12226 discordant, 700852 orphans, 6590 too large [>5000 bp], 11566716 duplicates)
Reads: 106072651 total, 97972 skipped (flags/unmapped)
Fragments: 53378280 total (52560838 tlen-paired, 6853 hash-paired, 17064 singletons, 8748 discordant, 784777 orphans, 9980 too large [>5000 bp], 12638727 duplicates)
Reads: 106890734 total, 102339 skipped (flags/unmapped)
Fragments: 53782360 total (52956894 tlen-paired, 9426 hash-paired, 17398 singletons, 11997 discordant, 786645 orphans, 13859 too large [>5000 bp], 12723228 duplicates)
Reads: 110617994 total, 238494 skipped (flags/unmapped)
Fragments: 56040689 total (53412891 tlen-paired, 8284 hash-paired, 18025 singletons, 513988 discordant, 2087501 orphans, 201824 too large [>5000 bp], 13087783 duplicates)