Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6WU-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6WU-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6WU-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6WU-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80701828 total, 85268 skipped (flags/unmapped)
Fragments: 40693741 total (39896410 tlen-paired, 5230 hash-paired, 13098 singletons, 9917 discordant, 769086 orphans, 5631 too large [>5000 bp], 8635901 duplicates)
Reads: 88066783 total, 77811 skipped (flags/unmapped)
Fragments: 44431099 total (43527184 tlen-paired, 5026 hash-paired, 14102 singletons, 7035 discordant, 877752 orphans, 9314 too large [>5000 bp], 9412229 duplicates)
Reads: 89251827 total, 82378 skipped (flags/unmapped)
Fragments: 45017091 total (44109487 tlen-paired, 4510 hash-paired, 14255 singletons, 9677 discordant, 879162 orphans, 14342 too large [>5000 bp], 9506606 duplicates)
Reads: 93353441 total, 185287 skipped (flags/unmapped)
Fragments: 47554563 total (44565964 tlen-paired, 5601 hash-paired, 14603 singletons, 591878 discordant, 2376517 orphans, 225074 too large [>5000 bp], 9853149 duplicates)