Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6K6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6K6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6K6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6K6-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68693892 total, 73660 skipped (flags/unmapped)
Fragments: 34646229 total (33949884 tlen-paired, 4430 hash-paired, 10364 singletons, 8735 discordant, 672816 orphans, 5477 too large [>5000 bp], 6513699 duplicates)
Reads: 69469903 total, 68485 skipped (flags/unmapped)
Fragments: 35044083 total (34318070 tlen-paired, 5952 hash-paired, 10389 singletons, 8321 discordant, 701351 orphans, 12496 too large [>5000 bp], 6547884 duplicates)
Reads: 75371486 total, 67326 skipped (flags/unmapped)
Fragments: 38029427 total (37248287 tlen-paired, 3704 hash-paired, 10844 singletons, 6926 discordant, 759666 orphans, 7908 too large [>5000 bp], 7098294 duplicates)
Reads: 79461498 total, 162418 skipped (flags/unmapped)
Fragments: 40456151 total (37929932 tlen-paired, 5585 hash-paired, 11690 singletons, 511398 discordant, 1997546 orphans, 198007 too large [>5000 bp], 7415145 duplicates)