Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1029_YCN-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 117331102 total, 129718 skipped (flags/unmapped)
Fragments: 58963806 total (58186153 tlen-paired, 15357 hash-paired, 18411 singletons, 18746 discordant, 725139 orphans, 8661 too large [>5000 bp], 13769812 duplicates)
Reads: 117801543 total, 118600 skipped (flags/unmapped)
Fragments: 59202750 total (58418158 tlen-paired, 19055 hash-paired, 18354 singletons, 16562 discordant, 730621 orphans, 13209 too large [>5000 bp], 13782923 duplicates)
Reads: 127686129 total, 118935 skipped (flags/unmapped)
Fragments: 64174526 total (63331697 tlen-paired, 15868 hash-paired, 20030 singletons, 13689 discordant, 793242 orphans, 15707 too large [>5000 bp], 14931577 duplicates)
Reads: 132832957 total, 278036 skipped (flags/unmapped)
Fragments: 67078422 total (64570651 tlen-paired, 15240 hash-paired, 21034 singletons, 489904 discordant, 1981593 orphans, 200352 too large [>5000 bp], 15485461 duplicates)