Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1VP-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_1VP-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1VP-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_1VP-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 80388238 total, 83535 skipped (flags/unmapped)
Fragments: 40451692 total (39804664 tlen-paired, 6521 hash-paired, 12600 singletons, 10630 discordant, 617277 orphans, 15598 too large [>5000 bp], 7770069 duplicates)
Reads: 87314937 total, 81093 skipped (flags/unmapped)
Fragments: 43943810 total (43256250 tlen-paired, 5705 hash-paired, 13504 singletons, 8711 discordant, 659640 orphans, 9684 too large [>5000 bp], 8458350 duplicates)
Reads: 79709528 total, 89311 skipped (flags/unmapped)
Fragments: 40104283 total (39484870 tlen-paired, 6695 hash-paired, 12604 singletons, 11737 discordant, 588377 orphans, 6316 too large [>5000 bp], 7747303 duplicates)
Reads: 91020887 total, 188302 skipped (flags/unmapped)
Fragments: 46100342 total (43970415 tlen-paired, 5953 hash-paired, 13952 singletons, 423561 discordant, 1686461 orphans, 166157 too large [>5000 bp], 8749314 duplicates)