Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_6F7-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6F7-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6F7-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_6F7-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 79273052 total, 87360 skipped (flags/unmapped)
Fragments: 39852256 total (39306612 tlen-paired, 6193 hash-paired, 14721 singletons, 10167 discordant, 514563 orphans, 5232 too large [>5000 bp], 7696745 duplicates)
Reads: 79952559 total, 83547 skipped (flags/unmapped)
Fragments: 40194375 total (39625376 tlen-paired, 6578 hash-paired, 14864 singletons, 9353 discordant, 538204 orphans, 16665 too large [>5000 bp], 7734182 duplicates)
Reads: 87077871 total, 84391 skipped (flags/unmapped)
Fragments: 43782887 total (43175853 tlen-paired, 7360 hash-paired, 16199 singletons, 7730 discordant, 575745 orphans, 9825 too large [>5000 bp], 8421953 duplicates)
Reads: 90044927 total, 194965 skipped (flags/unmapped)
Fragments: 45520753 total (43660412 tlen-paired, 7606 hash-paired, 16442 singletons, 368405 discordant, 1467888 orphans, 146393 too large [>5000 bp], 8657534 duplicates)