Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VV1-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VV1-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VV1-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VV1-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 77931892 total, 73691 skipped (flags/unmapped)
Fragments: 39196981 total (38620654 tlen-paired, 8180 hash-paired, 11887 singletons, 9664 discordant, 546596 orphans, 11361 too large [>5000 bp], 7152377 duplicates)
Reads: 76569571 total, 70395 skipped (flags/unmapped)
Fragments: 38515033 total (37954379 tlen-paired, 7014 hash-paired, 11653 singletons, 6626 discordant, 535361 orphans, 8062 too large [>5000 bp], 7064693 duplicates)
Reads: 70375096 total, 77622 skipped (flags/unmapped)
Fragments: 35392311 total (34878454 tlen-paired, 6647 hash-paired, 11001 singletons, 9520 discordant, 486689 orphans, 5271 too large [>5000 bp], 6485473 duplicates)
Reads: 80550777 total, 168597 skipped (flags/unmapped)
Fragments: 40768187 total (38978327 tlen-paired, 7758 hash-paired, 12410 singletons, 348038 discordant, 1421654 orphans, 139935 too large [>5000 bp], 7349826 duplicates)