Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 1136_814-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 1136_814-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 1136_814-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_814-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 104779839 total, 112021 skipped (flags/unmapped)
Fragments: 52779446 total (51853574 tlen-paired, 8095 hash-paired, 15688 singletons, 14047 discordant, 888042 orphans, 6328 too large [>5000 bp], 12876744 duplicates)
Reads: 116122013 total, 110017 skipped (flags/unmapped)
Fragments: 58498126 total (57437455 tlen-paired, 9354 hash-paired, 17326 singletons, 14627 discordant, 1019364 orphans, 26217 too large [>5000 bp], 14183546 duplicates)
Reads: 114352735 total, 104874 skipped (flags/unmapped)
Fragments: 57614956 total (56588576 tlen-paired, 8498 hash-paired, 16860 singletons, 10313 discordant, 990709 orphans, 12759 too large [>5000 bp], 13995336 duplicates)
Reads: 120175297 total, 250482 skipped (flags/unmapped)
Fragments: 61045012 total (57704320 tlen-paired, 9088 hash-paired, 17890 singletons, 653205 discordant, 2660509 orphans, 256595 too large [>5000 bp], 14598572 duplicates)