Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5AH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5AH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5AH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5AH-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 81241360 total, 77521 skipped (flags/unmapped)
Fragments: 40828900 total (40292642 tlen-paired, 10611 hash-paired, 12236 singletons, 9562 discordant, 503849 orphans, 11062 too large [>5000 bp], 7766636 duplicates)
Reads: 80550199 total, 83000 skipped (flags/unmapped)
Fragments: 40483063 total (39952046 tlen-paired, 10780 hash-paired, 12440 singletons, 11186 discordant, 496611 orphans, 5062 too large [>5000 bp], 7740967 duplicates)
Reads: 88412170 total, 78335 skipped (flags/unmapped)
Fragments: 44435972 total (43859827 tlen-paired, 10940 hash-paired, 13488 singletons, 8052 discordant, 543665 orphans, 9522 too large [>5000 bp], 8474867 duplicates)
Reads: 91781125 total, 185131 skipped (flags/unmapped)
Fragments: 46359090 total (44601272 tlen-paired, 11985 hash-paired, 13999 singletons, 345575 discordant, 1386259 orphans, 139036 too large [>5000 bp], 8741612 duplicates)