Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_XYF-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.baiThe index file is older than the data file: 869_XYF-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 869_XYF-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_XYF-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 94060070 total, 119284 skipped (flags/unmapped)
Fragments: 47328426 total (46573685 tlen-paired, 10122 hash-paired, 14466 singletons, 15165 discordant, 714988 orphans, 6694 too large [>5000 bp], 10674080 duplicates)
Reads: 102704797 total, 113680 skipped (flags/unmapped)
Fragments: 51687886 total (50854883 tlen-paired, 10872 hash-paired, 15372 singletons, 11322 discordant, 795437 orphans, 13077 too large [>5000 bp], 11618176 duplicates)
Reads: 103677125 total, 116453 skipped (flags/unmapped)
Fragments: 52174525 total (51320393 tlen-paired, 11343 hash-paired, 15588 singletons, 16105 discordant, 811096 orphans, 19153 too large [>5000 bp], 11698669 duplicates)
Reads: 107602109 total, 241479 skipped (flags/unmapped)
Fragments: 54528988 total (51912786 tlen-paired, 10541 hash-paired, 16063 singletons, 508903 discordant, 2080695 orphans, 199706 too large [>5000 bp], 12078663 duplicates)