Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_ED4-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ED4-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ED4-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ED4-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61821022 total, 66424 skipped (flags/unmapped)
Fragments: 31349122 total (30385508 tlen-paired, 3453 hash-paired, 8847 singletons, 6725 discordant, 944589 orphans, 4895 too large [>5000 bp], 6357432 duplicates)
Reads: 67021686 total, 62628 skipped (flags/unmapped)
Fragments: 34008683 total (32926527 tlen-paired, 3194 hash-paired, 9357 singletons, 4920 discordant, 1064685 orphans, 7867 too large [>5000 bp], 6861196 duplicates)
Reads: 68389737 total, 64424 skipped (flags/unmapped)
Fragments: 34691086 total (33600542 tlen-paired, 4185 hash-paired, 9411 singletons, 6820 discordant, 1070128 orphans, 11340 too large [>5000 bp], 7000033 duplicates)
Reads: 72592594 total, 145297 skipped (flags/unmapped)
Fragments: 37428451 total (33695222 tlen-paired, 2800 hash-paired, 9935 singletons, 740078 discordant, 2980416 orphans, 290373 too large [>5000 bp], 7301159 duplicates)