Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_03T-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_03T-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_03T-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_03T-N1-BDNA-1_A237CFYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62593816 total, 70155 skipped (flags/unmapped)
Fragments: 31598900 total (30906307 tlen-paired, 3465 hash-paired, 10183 singletons, 7561 discordant, 671384 orphans, 3714 too large [>5000 bp], 6185061 duplicates)
Reads: 69152653 total, 67684 skipped (flags/unmapped)
Fragments: 34917083 total (34133634 tlen-paired, 6605 hash-paired, 10937 singletons, 7787 discordant, 758120 orphans, 9930 too large [>5000 bp], 6797479 duplicates)
Reads: 68766078 total, 65837 skipped (flags/unmapped)
Fragments: 34728929 total (33946508 tlen-paired, 3683 hash-paired, 10878 singletons, 5733 discordant, 762127 orphans, 7694 too large [>5000 bp], 6758271 duplicates)
Reads: 72052697 total, 154191 skipped (flags/unmapped)
Fragments: 36793008 total (34196321 tlen-paired, 3369 hash-paired, 11267 singletons, 509706 discordant, 2072345 orphans, 198051 too large [>5000 bp], 7014245 duplicates)