Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_SL4-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_SL4-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_SL4-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_SL4-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 62310976 total, 40784 skipped (flags/unmapped)
Fragments: 31249512 total (30984995 tlen-paired, 4655 hash-paired, 286 singletons, 8298 discordant, 251278 orphans, 11366 too large [>5000 bp], 7519518 duplicates)
Reads: 61918834 total, 42724 skipped (flags/unmapped)
Fragments: 31052793 total (30800749 tlen-paired, 3067 hash-paired, 322 singletons, 10005 discordant, 238650 orphans, 4748 too large [>5000 bp], 7559621 duplicates)
Reads: 68630173 total, 38827 skipped (flags/unmapped)
Fragments: 34420441 total (34146154 tlen-paired, 2843 hash-paired, 416 singletons, 7434 discordant, 263594 orphans, 7237 too large [>5000 bp], 8220849 duplicates)
Reads: 69041467 total, 63852 skipped (flags/unmapped)
Fragments: 34731778 total (33986667 tlen-paired, 1988 hash-paired, 304 singletons, 143504 discordant, 599315 orphans, 56839 too large [>5000 bp], 8366579 duplicates)