Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_IYA-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_IYA-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_IYA-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_IYA-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58445548 total, 38316 skipped (flags/unmapped)
Fragments: 29292013 total (29077969 tlen-paired, 2995 hash-paired, 281 singletons, 7951 discordant, 202817 orphans, 13152 too large [>5000 bp], 6260881 duplicates)
Reads: 58164115 total, 40131 skipped (flags/unmapped)
Fragments: 29151398 total (28951621 tlen-paired, 3076 hash-paired, 299 singletons, 9113 discordant, 187289 orphans, 4388 too large [>5000 bp], 6301633 duplicates)
Reads: 64832025 total, 58020 skipped (flags/unmapped)
Fragments: 32567954 total (32012071 tlen-paired, 2308 hash-paired, 340 singletons, 106044 discordant, 447191 orphans, 42814 too large [>5000 bp], 6978661 duplicates)
Reads: 64339343 total, 37361 skipped (flags/unmapped)
Fragments: 32245243 total (32030736 tlen-paired, 3898 hash-paired, 370 singletons, 6631 discordant, 203608 orphans, 7737 too large [>5000 bp], 6831353 duplicates)