Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_U1S-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_U1S-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_U1S-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_U1S-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61706830 total, 43574 skipped (flags/unmapped)
Fragments: 30955330 total (30687448 tlen-paired, 2600 hash-paired, 268 singletons, 9510 discordant, 255504 orphans, 4184 too large [>5000 bp], 7305383 duplicates)
Reads: 69009573 total, 69913 skipped (flags/unmapped)
Fragments: 34741143 total (33916470 tlen-paired, 2060 hash-paired, 321 singletons, 156023 discordant, 666269 orphans, 61982 too large [>5000 bp], 8123049 duplicates)
Reads: 68208308 total, 42008 skipped (flags/unmapped)
Fragments: 34214974 total (33912264 tlen-paired, 2053 hash-paired, 325 singletons, 8945 discordant, 291387 orphans, 14032 too large [>5000 bp], 8005110 duplicates)
Reads: 67711138 total, 40178 skipped (flags/unmapped)
Fragments: 33965589 total (33677527 tlen-paired, 3334 hash-paired, 346 singletons, 7124 discordant, 277258 orphans, 8693 too large [>5000 bp], 7915719 duplicates)