Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_XA6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_XA6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_XA6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_XA6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 68873961 total, 49689 skipped (flags/unmapped)
Fragments: 34532490 total (34267521 tlen-paired, 2830 hash-paired, 288 singletons, 10995 discordant, 250856 orphans, 5218 too large [>5000 bp], 8544065 duplicates)
Reads: 76255215 total, 47467 skipped (flags/unmapped)
Fragments: 38231856 total (37929056 tlen-paired, 4898 hash-paired, 371 singletons, 10252 discordant, 287279 orphans, 15843 too large [>5000 bp], 9360202 duplicates)
Reads: 75673433 total, 43909 skipped (flags/unmapped)
Fragments: 37942720 total (37658850 tlen-paired, 3472 hash-paired, 443 singletons, 7714 discordant, 272241 orphans, 8384 too large [>5000 bp], 9230470 duplicates)
Reads: 77131038 total, 72779 skipped (flags/unmapped)
Fragments: 38786004 total (38002951 tlen-paired, 2161 hash-paired, 330 singletons, 148229 discordant, 632333 orphans, 59457 too large [>5000 bp], 9493924 duplicates)