Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_ZJJ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ZJJ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ZJJ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ZJJ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61609792 total, 43347 skipped (flags/unmapped)
Fragments: 30874184 total (30673346 tlen-paired, 2562 hash-paired, 339 singletons, 7691 discordant, 190246 orphans, 4331 too large [>5000 bp], 7493398 duplicates)
Reads: 67686434 total, 39269 skipped (flags/unmapped)
Fragments: 33922248 total (33701656 tlen-paired, 3178 hash-paired, 394 singletons, 5695 discordant, 211325 orphans, 7194 too large [>5000 bp], 8062511 duplicates)
Reads: 68952283 total, 69043 skipped (flags/unmapped)
Fragments: 34641583 total (34032004 tlen-paired, 2389 hash-paired, 354 singletons, 115934 discordant, 490902 orphans, 45665 too large [>5000 bp], 8303679 duplicates)
Reads: 68192365 total, 43996 skipped (flags/unmapped)
Fragments: 34171061 total (33941564 tlen-paired, 3792 hash-paired, 253 singletons, 7664 discordant, 217788 orphans, 12144 too large [>5000 bp], 8200378 duplicates)