Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_NNC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_NNC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_NNC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_NNC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 49886226 total, 33685 skipped (flags/unmapped)
Fragments: 25009070 total (24825456 tlen-paired, 2608 hash-paired, 267 singletons, 7817 discordant, 172922 orphans, 3795 too large [>5000 bp], 5747994 duplicates)
Reads: 54417552 total, 31070 skipped (flags/unmapped)
Fragments: 27280396 total (27086567 tlen-paired, 1910 hash-paired, 281 singletons, 5461 discordant, 186177 orphans, 6074 too large [>5000 bp], 6135094 duplicates)
Reads: 55558095 total, 51982 skipped (flags/unmapped)
Fragments: 27926322 total (27395333 tlen-paired, 1681 hash-paired, 258 singletons, 99513 discordant, 429537 orphans, 41632 too large [>5000 bp], 6350032 duplicates)
Reads: 55121604 total, 33691 skipped (flags/unmapped)
Fragments: 27631373 total (27425154 tlen-paired, 3218 hash-paired, 284 singletons, 7400 discordant, 195317 orphans, 10384 too large [>5000 bp], 6266984 duplicates)