Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VZQ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VZQ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VZQ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VZQ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 54520163 total, 38270 skipped (flags/unmapped)
Fragments: 27325073 total (27137318 tlen-paired, 2845 hash-paired, 308 singletons, 8097 discordant, 176505 orphans, 4280 too large [>5000 bp], 6075856 duplicates)
Reads: 59873978 total, 35438 skipped (flags/unmapped)
Fragments: 30007735 total (29808317 tlen-paired, 2939 hash-paired, 363 singletons, 5921 discordant, 190195 orphans, 6814 too large [>5000 bp], 6545109 duplicates)
Reads: 60469024 total, 38887 skipped (flags/unmapped)
Fragments: 30305864 total (30091407 tlen-paired, 5437 hash-paired, 293 singletons, 8297 discordant, 200430 orphans, 9566 too large [>5000 bp], 6664249 duplicates)
Reads: 61087734 total, 58322 skipped (flags/unmapped)
Fragments: 30689866 total (30155773 tlen-paired, 2272 hash-paired, 302 singletons, 99917 discordant, 431602 orphans, 40792 too large [>5000 bp], 6746756 duplicates)