Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 659_bD1-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.baiThe index file is older than the data file: 659_bD1-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 659_bD1-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bD1-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 54948912 total, 38330 skipped (flags/unmapped)
Fragments: 27532672 total (27345883 tlen-paired, 2945 hash-paired, 254 singletons, 7028 discordant, 176562 orphans, 11027 too large [>5000 bp], 5690205 duplicates)
Reads: 54723384 total, 39021 skipped (flags/unmapped)
Fragments: 27422790 total (27242476 tlen-paired, 2748 hash-paired, 267 singletons, 8459 discordant, 168840 orphans, 3945 too large [>5000 bp], 5721607 duplicates)
Reads: 61027671 total, 55755 skipped (flags/unmapped)
Fragments: 30646852 total (30152725 tlen-paired, 2291 hash-paired, 301 singletons, 93918 discordant, 397617 orphans, 38065 too large [>5000 bp], 6348245 duplicates)
Reads: 60968970 total, 36743 skipped (flags/unmapped)
Fragments: 30550894 total (30358905 tlen-paired, 2823 hash-paired, 316 singletons, 6191 discordant, 182659 orphans, 6707 too large [>5000 bp], 6260109 duplicates)