Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_NJC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_NJC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_NJC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_NJC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55875888 total, 38270 skipped (flags/unmapped)
Fragments: 28003452 total (27816009 tlen-paired, 2286 hash-paired, 292 singletons, 8379 discordant, 176486 orphans, 3746 too large [>5000 bp], 6258737 duplicates)
Reads: 61016469 total, 33608 skipped (flags/unmapped)
Fragments: 30579624 total (30381963 tlen-paired, 2471 hash-paired, 271 singletons, 5941 discordant, 188978 orphans, 6431 too large [>5000 bp], 6733939 duplicates)
Reads: 61860590 total, 37824 skipped (flags/unmapped)
Fragments: 30999907 total (30790686 tlen-paired, 2922 hash-paired, 286 singletons, 8015 discordant, 197998 orphans, 10618 too large [>5000 bp], 6853081 duplicates)
Reads: 62487341 total, 55722 skipped (flags/unmapped)
Fragments: 31391950 total (30858112 tlen-paired, 1964 hash-paired, 305 singletons, 99919 discordant, 431650 orphans, 39837 too large [>5000 bp], 6960960 duplicates)