Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_YQB-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_YQB-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_YQB-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_YQB-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 57029666 total, 40731 skipped (flags/unmapped)
Fragments: 28584002 total (28384316 tlen-paired, 2589 hash-paired, 259 singletons, 9168 discordant, 187670 orphans, 4430 too large [>5000 bp], 6431927 duplicates)
Reads: 63079221 total, 36866 skipped (flags/unmapped)
Fragments: 31615419 total (31402624 tlen-paired, 2531 hash-paired, 306 singletons, 6545 discordant, 203413 orphans, 7618 too large [>5000 bp], 6993312 duplicates)
Reads: 63212113 total, 41948 skipped (flags/unmapped)
Fragments: 31681212 total (31451255 tlen-paired, 4827 hash-paired, 261 singletons, 9067 discordant, 215802 orphans, 11902 too large [>5000 bp], 7050649 duplicates)
Reads: 64137390 total, 60415 skipped (flags/unmapped)
Fragments: 32225752 total (31661248 tlen-paired, 2374 hash-paired, 309 singletons, 106427 discordant, 455394 orphans, 40587 too large [>5000 bp], 7164601 duplicates)