Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bHx-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bHx-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bHx-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bHx-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78884035 total, 54340 skipped (flags/unmapped)
Fragments: 39538442 total (39264010 tlen-paired, 3021 hash-paired, 382 singletons, 12362 discordant, 258667 orphans, 5930 too large [>5000 bp], 9866864 duplicates)
Reads: 86191209 total, 48664 skipped (flags/unmapped)
Fragments: 43201095 total (42911406 tlen-paired, 2873 hash-paired, 469 singletons, 8999 discordant, 277348 orphans, 9086 too large [>5000 bp], 10678232 duplicates)
Reads: 87246186 total, 53817 skipped (flags/unmapped)
Fragments: 43726521 total (43421663 tlen-paired, 3993 hash-paired, 440 singletons, 12188 discordant, 288237 orphans, 14002 too large [>5000 bp], 10842458 duplicates)
Reads: 88037740 total, 80558 skipped (flags/unmapped)
Fragments: 44234718 total (43457924 tlen-paired, 3288 hash-paired, 388 singletons, 145660 discordant, 627458 orphans, 57796 too large [>5000 bp], 10986480 duplicates)