Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_KTE-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_KTE-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_KTE-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_KTE-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 65447205 total, 45097 skipped (flags/unmapped)
Fragments: 32801791 total (32576709 tlen-paired, 3220 hash-paired, 326 singletons, 10786 discordant, 210750 orphans, 4801 too large [>5000 bp], 7492682 duplicates)
Reads: 71838826 total, 41528 skipped (flags/unmapped)
Fragments: 36002675 total (35764945 tlen-paired, 3772 hash-paired, 383 singletons, 8152 discordant, 225423 orphans, 8877 too large [>5000 bp], 8110008 duplicates)
Reads: 72255951 total, 45199 skipped (flags/unmapped)
Fragments: 36208063 total (35951397 tlen-paired, 4615 hash-paired, 382 singletons, 10627 discordant, 241042 orphans, 18025 too large [>5000 bp], 8186734 duplicates)
Reads: 73178364 total, 67735 skipped (flags/unmapped)
Fragments: 36753228 total (36143093 tlen-paired, 2861 hash-paired, 351 singletons, 113271 discordant, 493652 orphans, 49088 too large [>5000 bp], 8326716 duplicates)