Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_csY-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_csY-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_csY-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_csY-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Loaded 472416 probes across 3366 contigs
Reads: 62728098 total, 46686 skipped (flags/unmapped)
Fragments: 31446808 total (31210110 tlen-paired, 3131 hash-paired, 312 singletons, 10693 discordant, 222562 orphans, 5335 too large [>5000 bp], 7115214 duplicates)
Reads: 68737948 total, 42171 skipped (flags/unmapped)
Fragments: 34457952 total (34209535 tlen-paired, 3728 hash-paired, 352 singletons, 7582 discordant, 236755 orphans, 8490 too large [>5000 bp], 7710702 duplicates)
Reads: 69255957 total, 44209 skipped (flags/unmapped)
Fragments: 34718450 total (34457626 tlen-paired, 3868 hash-paired, 366 singletons, 9940 discordant, 246650 orphans, 10932 too large [>5000 bp], 7806887 duplicates)
Reads: 70154490 total, 67645 skipped (flags/unmapped)
Fragments: 35263626 total (34592639 tlen-paired, 3208 hash-paired, 399 singletons, 125838 discordant, 541542 orphans, 50767 too large [>5000 bp], 7925987 duplicates)