Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_OZL-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OZL-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OZL-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OZL-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 61020081 total, 46392 skipped (flags/unmapped)
Fragments: 30640774 total (30305453 tlen-paired, 2638 hash-paired, 381 singletons, 13384 discordant, 318918 orphans, 5720 too large [>5000 bp], 7792370 duplicates)
Reads: 61384111 total, 44543 skipped (flags/unmapped)
Fragments: 30820306 total (30472527 tlen-paired, 6148 hash-paired, 360 singletons, 11889 discordant, 329382 orphans, 14349 too large [>5000 bp], 7793927 duplicates)
Reads: 67746776 total, 41217 skipped (flags/unmapped)
Fragments: 34016932 total (33655013 tlen-paired, 4336 hash-paired, 417 singletons, 10500 discordant, 346666 orphans, 9389 too large [>5000 bp], 8541267 duplicates)
Reads: 68493537 total, 75282 skipped (flags/unmapped)
Fragments: 34527224 total (33551904 tlen-paired, 2136 hash-paired, 367 singletons, 186893 discordant, 785924 orphans, 75049 too large [>5000 bp], 8695810 duplicates)