Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_QC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_QC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_QC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_QC-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 75645192 total, 55573 skipped (flags/unmapped)
Fragments: 37900427 total (37640438 tlen-paired, 4838 hash-paired, 401 singletons, 9530 discordant, 245220 orphans, 17193 too large [>5000 bp], 9612531 duplicates)
Reads: 74825556 total, 56824 skipped (flags/unmapped)
Fragments: 37492662 total (37249175 tlen-paired, 4643 hash-paired, 398 singletons, 11656 discordant, 226790 orphans, 5298 too large [>5000 bp], 9552955 duplicates)
Reads: 83247912 total, 52608 skipped (flags/unmapped)
Fragments: 41711580 total (41451275 tlen-paired, 4974 hash-paired, 432 singletons, 8353 discordant, 246546 orphans, 9561 too large [>5000 bp], 10565629 duplicates)
Reads: 83312927 total, 81248 skipped (flags/unmapped)
Fragments: 41831065 total (41172283 tlen-paired, 3689 hash-paired, 383 singletons, 125036 discordant, 529674 orphans, 49803 too large [>5000 bp], 10690178 duplicates)