Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bmI-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bmI-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bmI-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bmI-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63368076 total, 45390 skipped (flags/unmapped)
Fragments: 31764335 total (31513209 tlen-paired, 4075 hash-paired, 370 singletons, 8435 discordant, 238246 orphans, 16316 too large [>5000 bp], 7566997 duplicates)
Reads: 62868203 total, 46313 skipped (flags/unmapped)
Fragments: 31517253 total (31283388 tlen-paired, 3102 hash-paired, 345 singletons, 9719 discordant, 220699 orphans, 4214 too large [>5000 bp], 7581300 duplicates)
Reads: 69327861 total, 41383 skipped (flags/unmapped)
Fragments: 34755629 total (34504083 tlen-paired, 3220 hash-paired, 458 singletons, 7126 discordant, 240742 orphans, 8210 too large [>5000 bp], 8235037 duplicates)
Reads: 70520702 total, 77426 skipped (flags/unmapped)
Fragments: 35439880 total (34762254 tlen-paired, 3485 hash-paired, 443 singletons, 130375 discordant, 543323 orphans, 53641 too large [>5000 bp], 8440191 duplicates)