Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_c6S-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_c6S-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_c6S-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_c6S-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72890629 total, 53847 skipped (flags/unmapped)
Fragments: 36546593 total (36265154 tlen-paired, 4636 hash-paired, 370 singletons, 10537 discordant, 265896 orphans, 4931 too large [>5000 bp], 9234462 duplicates)
Reads: 79433238 total, 45629 skipped (flags/unmapped)
Fragments: 39830292 total (39529231 tlen-paired, 3144 hash-paired, 440 singletons, 7452 discordant, 290025 orphans, 8745 too large [>5000 bp], 9903194 duplicates)
Reads: 80502444 total, 51718 skipped (flags/unmapped)
Fragments: 40362982 total (40040487 tlen-paired, 5749 hash-paired, 405 singletons, 10156 discordant, 306185 orphans, 15676 too large [>5000 bp], 10084106 duplicates)
Reads: 81594827 total, 78283 skipped (flags/unmapped)
Fragments: 41036297 total (40185612 tlen-paired, 2944 hash-paired, 399 singletons, 162009 discordant, 685333 orphans, 64841 too large [>5000 bp], 10240967 duplicates)