Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_bu4-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bu4-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bu4-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_bu4-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 78754676 total, 56414 skipped (flags/unmapped)
Fragments: 39468821 total (39203918 tlen-paired, 3141 hash-paired, 400 singletons, 11904 discordant, 249458 orphans, 5239 too large [>5000 bp], 10643381 duplicates)
Reads: 79295298 total, 54982 skipped (flags/unmapped)
Fragments: 39738206 total (39448384 tlen-paired, 6112 hash-paired, 374 singletons, 10052 discordant, 273284 orphans, 18781 too large [>5000 bp], 10651093 duplicates)
Reads: 86376213 total, 51467 skipped (flags/unmapped)
Fragments: 43288529 total (43005748 tlen-paired, 3504 hash-paired, 487 singletons, 8439 discordant, 270351 orphans, 9263 too large [>5000 bp], 11573064 duplicates)
Reads: 88409187 total, 83215 skipped (flags/unmapped)
Fragments: 44404919 total (43658454 tlen-paired, 2753 hash-paired, 391 singletons, 144244 discordant, 599077 orphans, 57801 too large [>5000 bp], 11935107 duplicates)