Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_E6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai[W::hts_idx_load3] 
The index file is older than the data file: 869_E6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_E6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_E6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 64253420 total, 43032 skipped (flags/unmapped)
Fragments: 32202264 total (31987115 tlen-paired, 2626 hash-paired, 320 singletons, 9919 discordant, 202284 orphans, 4232 too large [>5000 bp], 7497635 duplicates)
Reads: 70743692 total, 40233 skipped (flags/unmapped)
Fragments: 35451938 total (35223222 tlen-paired, 4522 hash-paired, 402 singletons, 7331 discordant, 216461 orphans, 8223 too large [>5000 bp], 8118700 duplicates)
Reads: 70930912 total, 42668 skipped (flags/unmapped)
Fragments: 35547843 total (35301002 tlen-paired, 2731 hash-paired, 359 singletons, 9652 discordant, 234099 orphans, 13508 too large [>5000 bp], 8192305 duplicates)
Reads: 71491699 total, 63709 skipped (flags/unmapped)
Fragments: 35912617 total (35313396 tlen-paired, 3388 hash-paired, 311 singletons, 110565 discordant, 484957 orphans, 44012 too large [>5000 bp], 8295141 duplicates)