Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_PEY-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_PEY-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai[W::hts_idx_load3] The index file is older than the data file: 869_PEY-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai

[W::hts_idx_load3] The index file is older than the data file: 869_PEY-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 41404949 total, 28341 skipped (flags/unmapped)
Fragments: 20756777 total (20604712 tlen-paired, 1950 hash-paired, 199 singletons, 6859 discordant, 143057 orphans, 3155 too large [>5000 bp], 4778142 duplicates)
Reads: 41527090 total, 27083 skipped (flags/unmapped)
Fragments: 20818389 total (20656690 tlen-paired, 2297 hash-paired, 219 singletons, 5521 discordant, 153662 orphans, 8555 too large [>5000 bp], 4731005 duplicates)
Reads: 45283214 total, 25941 skipped (flags/unmapped)
Fragments: 22700947 total (22537372 tlen-paired, 2635 hash-paired, 274 singletons, 4941 discordant, 155725 orphans, 5689 too large [>5000 bp], 5106454 duplicates)
Reads: 45962679 total, 42181 skipped (flags/unmapped)
Fragments: 23099686 total (22673827 tlen-paired, 1384 hash-paired, 236 singletons, 81475 discordant, 342764 orphans, 32063 too large [>5000 bp], 5254056 duplicates)