Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_HUS-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_HUS-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_HUS-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_HUS-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59071248 total, 36832 skipped (flags/unmapped)
Fragments: 29597201 total (29399662 tlen-paired, 2354 hash-paired, 250 singletons, 7193 discordant, 187742 orphans, 14003 too large [>5000 bp], 6161996 duplicates)
Reads: 58796321 total, 38352 skipped (flags/unmapped)
Fragments: 29461029 total (29278406 tlen-paired, 2266 hash-paired, 300 singletons, 8646 discordant, 171411 orphans, 3811 too large [>5000 bp], 6201782 duplicates)
Reads: 65095289 total, 37882 skipped (flags/unmapped)
Fragments: 32613435 total (32417728 tlen-paired, 3591 hash-paired, 306 singletons, 6453 discordant, 185357 orphans, 8100 too large [>5000 bp], 6734199 duplicates)
Reads: 65683041 total, 60655 skipped (flags/unmapped)
Fragments: 32972327 total (32474148 tlen-paired, 3330 hash-paired, 268 singletons, 93933 discordant, 400648 orphans, 39324 too large [>5000 bp], 6880017 duplicates)