Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_LRV-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LRV-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LRV-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_LRV-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 63871412 total, 39375 skipped (flags/unmapped)
Fragments: 31994341 total (31799859 tlen-paired, 4103 hash-paired, 304 singletons, 7428 discordant, 182647 orphans, 13153 too large [>5000 bp], 6995541 duplicates)
Reads: 64342257 total, 56972 skipped (flags/unmapped)
Fragments: 32293366 total (31834366 tlen-paired, 2670 hash-paired, 293 singletons, 85363 discordant, 370674 orphans, 34760 too large [>5000 bp], 7081628 duplicates)
Reads: 62976758 total, 34285 skipped (flags/unmapped)
Fragments: 31548301 total (31373788 tlen-paired, 2614 hash-paired, 325 singletons, 5356 discordant, 166218 orphans, 6207 too large [>5000 bp], 6881359 duplicates)
Reads: 57862437 total, 39114 skipped (flags/unmapped)
Fragments: 28985280 total (28819080 tlen-paired, 2776 hash-paired, 299 singletons, 7703 discordant, 155422 orphans, 4242 too large [>5000 bp], 6403511 duplicates)