Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] [W::hts_idx_load3] The index file is older than the data file: 869_VG6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
The index file is older than the data file: 869_VG6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VG6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VG6-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 58365966 total, 40817 skipped (flags/unmapped)
Fragments: 29264719 total (29037490 tlen-paired, 3464 hash-paired, 336 singletons, 9356 discordant, 214073 orphans, 5060 too large [>5000 bp], 6656197 duplicates)
Reads: 63578389 total, 36457 skipped (flags/unmapped)
Fragments: 31878075 total (31638822 tlen-paired, 2697 hash-paired, 322 singletons, 6668 discordant, 229566 orphans, 7835 too large [>5000 bp], 7142679 duplicates)
Reads: 65367307 total, 62031 skipped (flags/unmapped)
Fragments: 32868522 total (32209939 tlen-paired, 2686 hash-paired, 337 singletons, 123905 discordant, 531655 orphans, 50112 too large [>5000 bp], 7391844 duplicates)
Reads: 64438019 total, 39249 skipped (flags/unmapped)
Fragments: 32309159 total (32050555 tlen-paired, 3499 hash-paired, 316 singletons, 9211 discordant, 245578 orphans, 13173 too large [>5000 bp], 7261889 duplicates)