Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_OC5-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OC5-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] Count mode: frac
The index file is older than the data file: 869_OC5-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_OC5-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 55801306 total, 36651 skipped (flags/unmapped)
Fragments: 27965650 total (27781091 tlen-paired, 2483 hash-paired, 257 singletons, 7651 discordant, 174168 orphans, 3890 too large [>5000 bp], 6099169 duplicates)
Reads: 61374783 total, 36592 skipped (flags/unmapped)
Fragments: 30756655 total (30551078 tlen-paired, 3989 hash-paired, 277 singletons, 7339 discordant, 193972 orphans, 9565 too large [>5000 bp], 6647179 duplicates)
Reads: 61063100 total, 31478 skipped (flags/unmapped)
Fragments: 30603931 total (30407093 tlen-paired, 2630 hash-paired, 313 singletons, 5816 discordant, 188079 orphans, 6076 too large [>5000 bp], 6565764 duplicates)
Reads: 62285011 total, 52561 skipped (flags/unmapped)
Fragments: 31290144 total (30760187 tlen-paired, 1927 hash-paired, 295 singletons, 99916 discordant, 427819 orphans, 40138 too large [>5000 bp], 6773251 duplicates)