Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_TVZ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TVZ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_TVZ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_TVZ-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 57672627 total, 57170 skipped (flags/unmapped)
Fragments: 28962404 total (28488795 tlen-paired, 3047 hash-paired, 303 singletons, 87927 discordant, 382332 orphans, 36642 too large [>5000 bp], 6037724 duplicates)
Reads: 57109460 total, 35755 skipped (flags/unmapped)
Fragments: 28617559 total (28424774 tlen-paired, 4091 hash-paired, 265 singletons, 7701 discordant, 180728 orphans, 9790 too large [>5000 bp], 5963631 duplicates)
Reads: 56490868 total, 31936 skipped (flags/unmapped)
Fragments: 28308103 total (28131077 tlen-paired, 1923 hash-paired, 341 singletons, 5515 discordant, 169247 orphans, 6157 too large [>5000 bp], 5862214 duplicates)
Reads: 51699594 total, 36839 skipped (flags/unmapped)
Fragments: 25907213 total (25737391 tlen-paired, 2873 hash-paired, 233 singletons, 8054 discordant, 158662 orphans, 3612 too large [>5000 bp], 5447764 duplicates)