Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_BLV-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_BLV-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_BLV-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_BLV-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59760638 total, 40555 skipped (flags/unmapped)
Fragments: 29944271 total (29755293 tlen-paired, 3013 hash-paired, 317 singletons, 8892 discordant, 176756 orphans, 4307 too large [>5000 bp], 6942202 duplicates)
Reads: 66368487 total, 63448 skipped (flags/unmapped)
Fragments: 33325181 total (32798983 tlen-paired, 2341 hash-paired, 324 singletons, 97400 discordant, 426133 orphans, 40567 too large [>5000 bp], 7660439 duplicates)
Reads: 65416094 total, 35792 skipped (flags/unmapped)
Fragments: 32778547 total (32578856 tlen-paired, 2236 hash-paired, 365 singletons, 6125 discordant, 190965 orphans, 7269 too large [>5000 bp], 7459427 duplicates)
Reads: 65844446 total, 40820 skipped (flags/unmapped)
Fragments: 32989601 total (32782705 tlen-paired, 2928 hash-paired, 290 singletons, 8430 discordant, 195248 orphans, 9981 too large [>5000 bp], 7576937 duplicates)