Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 659_esc-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_esc-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_esc-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 659_esc-N1-BDNA-1_A23FG3YLT4_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 72964482 total, 50322 skipped (flags/unmapped)
Fragments: 36567105 total (36322287 tlen-paired, 2887 hash-paired, 403 singletons, 11049 discordant, 230479 orphans, 5416 too large [>5000 bp], 9040495 duplicates)
Reads: 80320614 total, 45721 skipped (flags/unmapped)
Fragments: 40253076 total (39993475 tlen-paired, 3955 hash-paired, 472 singletons, 7839 discordant, 247335 orphans, 8274 too large [>5000 bp], 9846460 duplicates)
Reads: 80348378 total, 50666 skipped (flags/unmapped)
Fragments: 40263237 total (39999440 tlen-paired, 3509 hash-paired, 448 singletons, 10358 discordant, 249482 orphans, 10584 too large [>5000 bp], 9888540 duplicates)
Reads: 81826995 total, 81412 skipped (flags/unmapped)
Fragments: 41095891 total (40404251 tlen-paired, 3039 hash-paired, 425 singletons, 130480 discordant, 557696 orphans, 55961 too large [>5000 bp], 10099388 duplicates)