Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_5Z2-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5Z2-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5Z2-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_5Z2-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 88100690 total, 75058 skipped (flags/unmapped)
Fragments: 44191798 total (43777563 tlen-paired, 21670 hash-paired, 8427 singletons, 7893 discordant, 376245 orphans, 13354 too large [>5000 bp], 6395985 duplicates)
Reads: 87022082 total, 67206 skipped (flags/unmapped)
Fragments: 43666728 total (43231382 tlen-paired, 20566 hash-paired, 8324 singletons, 7772 discordant, 398684 orphans, 14214 too large [>5000 bp], 6271441 duplicates)
Reads: 96749006 total, 63533 skipped (flags/unmapped)
Fragments: 48555634 total (48078457 tlen-paired, 21737 hash-paired, 9170 singletons, 6819 discordant, 439451 orphans, 11413 too large [>5000 bp], 6936630 duplicates)
Reads: 96346632 total, 116702 skipped (flags/unmapped)
Fragments: 48551311 total (47180230 tlen-paired, 22327 hash-paired, 9178 singletons, 266858 discordant, 1072718 orphans, 104602 too large [>5000 bp], 6905291 duplicates)