Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_ED4-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ED4-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ED4-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_ED4-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 59644895 total, 53618 skipped (flags/unmapped)
Fragments: 30130309 total (29437812 tlen-paired, 4610 hash-paired, 5598 singletons, 4802 discordant, 677487 orphans, 6872 too large [>5000 bp], 3868891 duplicates)
Reads: 64362101 total, 49448 skipped (flags/unmapped)
Fragments: 32529711 total (31752591 tlen-paired, 5725 hash-paired, 5920 singletons, 5102 discordant, 760373 orphans, 9762 too large [>5000 bp], 4147793 duplicates)
Reads: 64272402 total, 47474 skipped (flags/unmapped)
Fragments: 32501304 total (31697437 tlen-paired, 4620 hash-paired, 5748 singletons, 4163 discordant, 789336 orphans, 8702 too large [>5000 bp], 4120348 duplicates)
Reads: 66713489 total, 83738 skipped (flags/unmapped)
Fragments: 34192858 total (31507175 tlen-paired, 3214 hash-paired, 6206 singletons, 530434 discordant, 2145829 orphans, 198035 too large [>5000 bp], 4194547 duplicates)