Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VTY-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_VTY-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VTY-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_VTY-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 60117520 total, 52838 skipped (flags/unmapped)
Fragments: 30217484 total (29816883 tlen-paired, 8340 hash-paired, 5731 singletons, 5557 discordant, 380973 orphans, 8209 too large [>5000 bp], 3442973 duplicates)
Reads: 65563184 total, 45532 skipped (flags/unmapped)
Fragments: 32977228 total (32511962 tlen-paired, 8414 hash-paired, 6115 singletons, 4466 discordant, 446271 orphans, 7791 too large [>5000 bp], 3724301 duplicates)
Reads: 64953595 total, 47481 skipped (flags/unmapped)
Fragments: 32660791 total (32208196 tlen-paired, 7893 hash-paired, 6240 singletons, 5516 discordant, 432946 orphans, 11859 too large [>5000 bp], 3688716 duplicates)
Reads: 66305089 total, 78553 skipped (flags/unmapped)
Fragments: 33590119 total (32129081 tlen-paired, 7577 hash-paired, 6301 singletons, 287559 discordant, 1159601 orphans, 106100 too large [>5000 bp], 3731925 duplicates)