Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2S9-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2S9-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_2S9-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_2S9-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 86638009 total, 74964 skipped (flags/unmapped)
Fragments: 43534752 total (42983288 tlen-paired, 12596 hash-paired, 8589 singletons, 9651 discordant, 520628 orphans, 11379 too large [>5000 bp], 6797415 duplicates)
Reads: 94441352 total, 69247 skipped (flags/unmapped)
Fragments: 47481812 total (46843550 tlen-paired, 14217 hash-paired, 9173 singletons, 7920 discordant, 606952 orphans, 12303 too large [>5000 bp], 7336893 duplicates)
Reads: 93825261 total, 72554 skipped (flags/unmapped)
Fragments: 47160743 total (46527043 tlen-paired, 14440 hash-paired, 9250 singletons, 9891 discordant, 600119 orphans, 20295 too large [>5000 bp], 7297587 duplicates)
Reads: 95546135 total, 120109 skipped (flags/unmapped)
Fragments: 48345976 total (46392635 tlen-paired, 13199 hash-paired, 9316 singletons, 380040 discordant, 1550786 orphans, 147088 too large [>5000 bp], 7364425 duplicates)