Count mode: frac
Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 1136_0QH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0QH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0QH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 1136_0QH-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 52929986 total, 41295 skipped (flags/unmapped)
Fragments: 26651772 total (26210613 tlen-paired, 4572 hash-paired, 4763 singletons, 5042 discordant, 426782 orphans, 8346 too large [>5000 bp], 3071797 duplicates)
Reads: 48864482 total, 43274 skipped (flags/unmapped)
Fragments: 24595486 total (24205442 tlen-paired, 5158 hash-paired, 4552 singletons, 4576 discordant, 375758 orphans, 5273 too large [>5000 bp], 2862997 duplicates)
Reads: 53066952 total, 39578 skipped (flags/unmapped)
Fragments: 26729548 total (26276468 tlen-paired, 4978 hash-paired, 4736 singletons, 3918 discordant, 439448 orphans, 6231 too large [>5000 bp], 3071647 duplicates)
Reads: 54229529 total, 66567 skipped (flags/unmapped)
Fragments: 27556373 total (26101112 tlen-paired, 4558 hash-paired, 4883 singletons, 288103 discordant, 1157717 orphans, 106408 too large [>5000 bp], 3106909 duplicates)