Count mode: frac
Count mode: frac
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_HV2-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_HV2-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Count mode: frac
[W::hts_idx_load3] The index file is older than the data file: 869_HV2-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
[W::hts_idx_load3] The index file is older than the data file: 869_HV2-N1-BDNA-1_A23H3NYLT3_1.recalibrated.bam.bai
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Deduplicated 94 probes with identical coordinates
Loaded 472416 probes across 3366 contigs
Reads: 82872359 total, 73886 skipped (flags/unmapped)
Fragments: 41595875 total (41143456 tlen-paired, 15724 hash-paired, 8025 singletons, 8202 discordant, 420468 orphans, 17608 too large [>5000 bp], 5676581 duplicates)
Reads: 88987648 total, 65536 skipped (flags/unmapped)
Fragments: 44688515 total (44181272 tlen-paired, 19980 hash-paired, 8486 singletons, 9311 discordant, 469466 orphans, 11517 too large [>5000 bp], 6014396 duplicates)
Reads: 89433299 total, 63556 skipped (flags/unmapped)
Fragments: 44918074 total (44405815 tlen-paired, 15447 hash-paired, 8488 singletons, 6379 discordant, 481945 orphans, 12014 too large [>5000 bp], 6039306 duplicates)
Reads: 90886267 total, 106125 skipped (flags/unmapped)
Fragments: 45894601 total (44339834 tlen-paired, 15377 hash-paired, 8612 singletons, 301546 discordant, 1229232 orphans, 114392 too large [>5000 bp], 6089858 duplicates)